PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G039600.1
Common NameB456_010G039600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 313aa    MW: 35215.6 Da    PI: 8.3304
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G039600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89e-06155174120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C+ C k+F+r  nL+ H+
  Gorai.010G039600.1 155 FSCHVCFKTFNRYNNLQMHM 174
                         89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-5137177No hitNo description
PROSITE profilePS5015710.055155182IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-4155174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
SuperFamilySSF576673.64E-5221259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MLFSFNCIIL QPPYLFSLNI LSIGLGNPII KPFQKLNKNK PTFFLVLFFL MEPSDVSCDS  60
DLVSSTNYHT DMEPLDLFPG AMHESLEPMP LLSYENPKPC SEEDKEDVTV ALHIGLPDPS  120
NGSNTNSSKE NIANGGGKQF WIPTPEQILI GFTNFSCHVC FKTFNRYNNL QMHMWGHGSQ  180
YRKGPESLKG TQPRAMLGIP CYCCAEGCKN NIEHPRAKPL KDFRTLQTHY KRKHGLKPFM  240
CRKCGKFLAV KGDWRTHEKN CGKRWLCVCG SDFKHKRSLK DHIKAFGSGH GPFPPSFDGV  300
EVLEDTASSL HV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5800841e-113JX580084.1 Gossypium hirsutum clone NBRI_GE12446 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452892.10.0PREDICTED: protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-112TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A0D2SM950.0A0A0D2SM95_G
STRINGVIT_18s0001g05860.t011e-127(Vitis vinifera)
STRINGPOPTR_0002s09840.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-113C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]